PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678441207
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SRS
Protein Properties Length: 259aa    MW: 28834.3 Da    PI: 8.5035
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678441207genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702154.19.8e-48171914153
     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqq..qlaaasskaaasaaeaaskrkrel..................kskkq 83 
                 +++CqdCGnqakkdC+h RCRtCC+srgf+C+thvkstW p+++rr +++   ++ ++ k+ ++++++   ++ +                    ++++
  678441207  17 SSSRCQDCGNQAKKDCEHLRCRTCCRSRGFHCQTHVKSTWTPMSRRRPKHAvdLQHGPNVKRCRDHHQELLGESLTVvvqirnflrscaflffevLHTQT 116
                5689*******************************************98541134444444444443333333333322222223333344433222222 PP

     DUF702  84 salsstklssaeskkeletss........................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                                             +P ev  +avfr+vrvss ++  +++aYqt+v+igGh f GiLydqG+e
  678441207 117 L-------------------ApvrclmpsfsafrrfknvgfegrdFPGEVCFPAVFRAVRVSSYNNTVDQFAYQTSVNIGGHNFTGILYDQGPE 191
                2...................0222344445555566666777788***********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-4618191IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.7E-252162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-19143190IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MMMRAEDLEA INSDSSSSSR CQDCGNQAKK DCEHLRCRTC CRSRGFHCQT HVKSTWTPMS  60
RRRPKHAVDL QHGPNVKRCR DHHQELLGES LTVVVQIRNF LRSCAFLFFE VLHTQTLAPV  120
RCLMPSFSAF RRFKNVGFEG RDFPGEVCFP AVFRAVRVSS YNNTVDQFAY QTSVNIGGHN  180
FTGILYDQGP EPDGTENFLG RESSSTTGGG GGAGGSILQH HFPASTTFAG TSTTSPHYPT  240
SQFPAFTFAG SQFFHYPKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088766.15e-62PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLS8BY389e-67S8BY38_9LAMI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.16e-40SHI-related sequence 5